PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123600001
Common NameGSBRNA2T00123600001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 194aa    MW: 21015.8 Da    PI: 7.9172
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123600001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.84.4e-39111111100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf ae+ +++fa+vhk+FGasn +kll  +p ++r++a+++l yeA ar+rdPvyG+vg+i++lq+q+++
  GSBRNA2T00123600001  11 PCGACKFLRRKCVAECIFAPYFDAEEgTAHFAAVHKVFGASNTSKLLLMIPANRRPEAVATLSYEALARLRDPVYGCVGHIFALQHQVMS 100
                          7*********************999879************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l++ela++k++
  GSBRNA2T00123600001 101 LQEELAVVKTH 111
                          ******99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.84810112IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSGSTPSGGS PCGACKFLRR KCVAECIFAP YFDAEEGTAH FAAVHKVFGA SNTSKLLLMI  60
PANRRPEAVA TLSYEALARL RDPVYGCVGH IFALQHQVMS LQEELAVVKT HLTTLERLPP  120
QPKQQNNSQT EAASSTKAPL IATADHKKNN VSSSLLHIYG MSQEQQQQQP QEGTEVPNES  180
YLTDGKYRSS SPI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111506.11e-137PREDICTED: LOB domain-containing protein 31
RefseqXP_013731248.11e-137PREDICTED: LOB domain-containing protein 31
SwissprotO813222e-87LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A078F2791e-143A0A078F279_BRANA; BnaCnng02520D protein
STRINGBra037322.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.13e-78LOB domain-containing protein 31
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]